[Chung-Feng Kao] Innovative Development of an Integrated AI-Assisted SNP Population Genetics Analysis Platform
Associate Professor Chung-Feng Kao and his team developed ShiNyP, an interactive SNP-based population genetics analysis platform built on R/Shiny. The platform integrates quality control, population structure analysis, genetic diversity analysis, selection sweep detection, and core collection construction, while also incorporating generative AI to automatically produce interpretable analytical reports and more than 70 publication-ready visualizations and summary tables. By greatly simplifying complex analytical workflows, ShiNyP significantly lowers the barrier to population genomic analysis. The research was published in Molecular Biology and Evolution (Huang et al., 2025).
Article source: https://academic.oup.com/mbe/article/42/6/msaf117/8150929